Go Back   SEQanswers > Applications Forums > RNA Sequencing

Similar Threads
Thread Thread Starter Forum Replies Last Post
RNAseq Alternative Splicing awk Bioinformatics 33 06-10-2015 03:26 AM
SOAPdenovo-trans alternative splicing pbrand Bioinformatics 8 10-10-2012 01:15 AM
Solas - Alternative Splicing analysis Thomas Doktor Bioinformatics 1 08-04-2011 07:15 AM
Test datasets for judging RNA-seq alternative splicing detection tools acnoll RNA Sequencing 0 02-10-2010 07:33 AM

Thread Tools
Old 01-18-2013, 07:01 AM   #1
Junior Member
Location: new delhi, india

Join Date: Jan 2013
Posts: 1
Default tools for differential alternative splicing

hi all,
I am a new member of this community, till now i read various threads which i found really helpful for my work. i have various queries, but i will try to discuss them step by step.
I am not that sound in bioinformatics, but i am trying to get a better understanding of it.
i am using illumina genome analyser, and i am interested in RNA seq analysis.
i had used clc genomics, avadis ngs(trial version) and now working with cufflink pipeline(along with cuffdiff).
clc genomics is very easy to understand and is helpful in various downstream RNA seq analysis, but it has no options of differential alternative splicing.
i am interested in differential alternative splicing pattern in wild type and mutant condition, can anyone please suggest me software for the same.(i don't have replicates as is required by various softwares, so please suggest keeping the same in mind)

thanking you in anticipation.
shamstabrez is offline   Reply With Quote

differential splicing, rnaseq

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 08:08 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO