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Old 10-05-2018, 08:55 AM   #1
Location: OH, USA

Join Date: Oct 2013
Posts: 18
Default Error while extracting fasta seqeunces from stringtie merged gtf.

I have used stringtie -merge option to get a merged gtf file of my assembly. However, when I use gffread to extract sequences from the merged gtf, I get the following error.

Error (GFaSeqGet): subsequence cannot be larger than 465
Error getting subseq for gene1 (465..1503)!

Has anybody ran into this earlier? Any suggestions will be greatly appreciated!
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