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Old 06-17-2011, 10:30 AM   #1
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Location: US

Join Date: Jun 2011
Posts: 4
Default Beginner Sequencing Analysis question

I am new to sequencing analysis, so this may be a very obvious question.

We are using the tuxedo suite to analyze our RNA sequencing data obtained from an Illumina HiScanSQ. I have gotten through the analysis steps on some sample data (just to familiarize myself with the process) and now need to view the results.

I've downloaded the IGV from the Broad Institute, but am not sure how to use this to visualize the results we are interested in. At this point, we are interesting in copy number of genes and transcripts, as well as spliciforms that might differ between samples. Perhaps there is another piece of software that would be better suited.

Any help you all could give me would be appreciated! Thanks in advance.
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