Hi,
I am looking at some data processed through Illumina's BWA+GATK pipeline.
I found some funny GT values, like:
./. 1/1 1/1 1/1 ./. 1
. . 1 . . .
1 ./. 0/1 ./. ./. ./.
1 1 1/1 1 ./. ./.
I am familiar with 1/1, 0/1, 0/2, etc., but I don't understand what "." and "1" mean. Can anybody help me understand this output?
Thanks!
I am looking at some data processed through Illumina's BWA+GATK pipeline.
I found some funny GT values, like:
./. 1/1 1/1 1/1 ./. 1
. . 1 . . .
1 ./. 0/1 ./. ./. ./.
1 1 1/1 1 ./. ./.
I am familiar with 1/1, 0/1, 0/2, etc., but I don't understand what "." and "1" mean. Can anybody help me understand this output?
Thanks!