Hi folks,
I faced a problem when I am running in a server BuildDatabase before RepeatModeler using a multifasta genome assembly (1g_modif.fasta) containing 12 unitigs, with nucleotides letters in capital, and sequences names as U1,U2,U3 etc. My command is as follow:
BuildDatabase -name 1g -engine ncbi 1g_modif.fasta
The BuildDatabase is running instantly but the following is depicted
Building database 1g:
Adding 1g_modif.fasta to database
Number of sequences (bp) added to database: 0 ( 0 bp )
Seems that the database didnt manage to add any sequences (unitigs) and bp in the database. I guess the problem should be probably in the format of the input multifasta file of the genomic assemble but really I dont know where exactly
Any ideas or suggestions?
Thanks in advance
I faced a problem when I am running in a server BuildDatabase before RepeatModeler using a multifasta genome assembly (1g_modif.fasta) containing 12 unitigs, with nucleotides letters in capital, and sequences names as U1,U2,U3 etc. My command is as follow:
BuildDatabase -name 1g -engine ncbi 1g_modif.fasta
The BuildDatabase is running instantly but the following is depicted
Building database 1g:
Adding 1g_modif.fasta to database
Number of sequences (bp) added to database: 0 ( 0 bp )
Seems that the database didnt manage to add any sequences (unitigs) and bp in the database. I guess the problem should be probably in the format of the input multifasta file of the genomic assemble but really I dont know where exactly
Any ideas or suggestions?
Thanks in advance
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