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Old 05-13-2016, 03:59 PM   #1
sanjeevksh
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Default vcf to gvf conversion

Dear All,
Is there any tool available to convert vcf file to gvf file?
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Old 07-04-2016, 06:28 PM   #2
Genos
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it's impossible.

If the vcf file only have filtered variant information, you don't have enough information to generate a gvcf file that covers all loci in the genome.
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Old 07-19-2016, 12:45 AM   #3
dan
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Hi,

I also have a 'genomic VCF', that /does/ cover all loci in the genome... Is it still impossible?


Thanks,
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Old 07-19-2016, 02:30 AM   #4
Medhat
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http://www.yandell-lab.org/software/vaast.html

have such tool

Last edited by Medhat; 07-19-2016 at 02:32 AM.
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Old 07-19-2016, 07:29 AM   #5
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Which?
http://www.yandell-lab.org/software/index.html
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Old 07-19-2016, 08:28 AM   #6
Medhat
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Quote:
Originally Posted by dan View Post
this one VAAST
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Old 07-30-2016, 02:56 AM   #7
sanjeevksh
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Thanks for the replies. However, I was looking for a vcf to gvf converter and not to gvcf. I found very useful set of scripts located here: https://github.com/cfljam/galaxy-pcr-markers

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