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Complete beginner trying to conduct phylogenetic analysis Tarka Dal Bioinformatics 2 03-10-2017 10:12 AM

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Old 03-23-2019, 03:35 AM   #1
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Question How to generate partition file for raxmlHPC analysis?

Hi all, I need to conduct evolutionary analysis by raxmlHPC, wherein I have to to follow the model as given below,

partition model-maximum likelihood phylogeny by GTR GAMMA model of substitution with 100 nonparametric bootstrap
I have phylip alignment file generated by CLUSTALW, which consist 31 bacterial strains (each strain consist of 29 concatenated gene sequences). Therefore, please let me how to create partitioned file?

Last edited by dineshkumarsrk; 03-23-2019 at 03:42 AM.
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evolutionary analysis, phylogeny, raxml

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