Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
bowtie index problem (bowtie-build and then bowtie-inspect) tgenahmet Bioinformatics 4 09-10-2013 11:51 AM
Completely new to this and out of my depth Fwip 454 Pyrosequencing 14 12-06-2011 03:02 PM
What's maximum depth and minimum depth? slny Bioinformatics 0 03-17-2011 10:13 AM
depth calculation sheilal Bioinformatics 5 10-04-2009 11:20 AM
A question about alignment depth cgjkjk Bioinformatics 5 02-03-2009 04:23 AM

Thread Tools
Old 03-14-2012, 11:11 AM   #1
Location: Germany

Join Date: Nov 2011
Posts: 27
Default Bowtie depth-first vs. best-first


Can anyone explain the difference between the depth-first backtracking approach and the --best (best-first) approach in Bowtie? Or in other words, what is depth-first doing and why does it not report the very best alignment?
Thank you
hanshart is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 12:53 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO