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Old 07-19-2012, 04:30 AM   #1
pravee1216
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Location: India

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Default Summary of multi-sample VCF

All,

Does anyone know any tool that can summarize the variants in a multi-sample VCF file? I would require a table format summary of variants that shows:

a) #novel
b) #dbSNP
c) dbSNP_%
d) #heterozygous
e) #homozygous

for each sample as columns:

Any suggestion would be useful.

Raj
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Old 02-13-2013, 10:27 AM   #2
bioruan
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Location: mn

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Smile

You probable wont find such package.
But https://sourceforge.net/projects/vcf-summarize/
can help you extract any field in a multisample vcf and automize summarization and plot
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