Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Reference guided assembly StopCodon De novo discovery 5 06-25-2013 09:49 AM
A reference-genome guided compression stratigy for storing mapped reads feeldead Bioinformatics 2 09-17-2011 05:56 AM
Reference-guided cDNA assembly using related genomes ohofmann Bioinformatics 0 02-08-2011 09:20 AM
bacterial consensus sequence reference guided assembly Kerensa Bioinformatics 0 01-10-2011 08:38 PM
(Reference guided) novel transcript detection from RNA-seq? kopi-o Bioinformatics 5 04-05-2010 09:13 AM

Thread Tools
Old 11-27-2010, 01:55 PM   #1
Junior Member
Location: Rio de Janeiro

Join Date: Mar 2010
Posts: 7
Default Reference-guided alignment

Hi evrybody, I have a simple problem (hope). I have a transcriptome from Illumina reads. The main problem is my sample comes a species with no sequenced genome. Anyway, this transcriptome looks very well, but some evidences show that could be improved. I want to align against a very related species (with a sequenced genome).

How could do this in windows? Which reference (GFF?, transcripts? chromosomes?) must I use?
Thanks in advance
crisant is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 02:12 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO