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  • pdb files for c. elegans

    Hi Members,
    Pardon me if this thread is not in correct forum and the question is too silly.

    I am working on certain set of transmembrane proteins in C. elegans.
    I need to visualize them, for that I am using Chimera UCSF tool. It requires pdb file.
    I am unable to find the same on RCSB PDB. It shows me output for homo sapiens.
    I wonder, how can I get hands on the pdb files I am looking for.
    Worm base.
    Please suggest
    Bioinformaticscally calm

  • #2
    C. elegans has a total of 215 hits in PDB: http://www.rcsb.org/pdb/results/resu...toshow=Current

    Of these three seem to be classified as membrane or cell surface proteins: http://www.rcsb.org/pdb/results/resu...toshow=Current

    Are you sure the protein(s) you are interested in have had their structures experimentally determined? If you have published references then there should be PDB ID's included in there that you can use.

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