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Old 10-26-2010, 12:10 AM   #1
AronaldJ
Junior Member
 
Location: whole transcriptome

Join Date: Oct 2010
Posts: 8
Default Solid formats translator(base space/color space/double encoded)

hi

When I performed Solid software denovo2, I used solid_denovo_preprocessor.pl to convert color space into double encoded and completed Oases. but the result was transcripts.fa and could not use solid_denovo_postprocessor.pl to convert double encoded into base space. I looked at "java -cp $denovo2/utils/miniAssembler.jarcom.lifetech.miniAssembler.util.FormatsTranslator <conversion_type> <sequence_file> <out_converted_file>" in DeNovoAssemblyProtocol0060810.pdf at page 32. however, in my denovo2 folder, there is not miniAssembler.jarcom.lifetech.miniAssembler.util.FormatsTranslator but miniAssembler. I could not convert it by miniAssembler.

I look forward to everyone letter.
Thank you
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