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Old 12-09-2010, 05:09 AM   #1
jay2008
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Location: Australia

Join Date: Sep 2010
Posts: 44
Default SAM file from bowtie

Hello,
I am using bowtie to align deep sequence data to get SAM output file.
I want to find reads that have more than 5 multiple mapping.
does anyone know how to find the number of alignment mapping for all reads in the output SAM file?

thanks
Jian
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