Hi All,
This is a basic question wrt Tophat2 output. I want to name the output of tophat in the ./tophat/ to another name apart from "accepted_hits.bam". Is that possible? If so, how?
The reason is that I am trying to split the fastq file into multiple parts and run this in parallel. In the end, I shall combine all the output files into 1 bam files. As of now, Tophat will overwrite "accepted_hits.bam" and I will only get the last output instead of all the individual files.
Thank you for your help.
Best,
Vishal
This is a basic question wrt Tophat2 output. I want to name the output of tophat in the ./tophat/ to another name apart from "accepted_hits.bam". Is that possible? If so, how?
The reason is that I am trying to split the fastq file into multiple parts and run this in parallel. In the end, I shall combine all the output files into 1 bam files. As of now, Tophat will overwrite "accepted_hits.bam" and I will only get the last output instead of all the individual files.
Thank you for your help.
Best,
Vishal
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