Looking for assembler to align very short reads

[andylai]

Hi all,

Now I have a question, when I tried to align several very short length of reads, I used cap3, it cannot get the consensus sequence. The input file list below:
>S3O
CCGAGGCACACACAGCGCGAGTGGGCAAGGCGTGGCTGGGAACGTAGGGGTCTCAG
>6EC
CATGTTCTTTGAAGGTACTTCCCAAGAAAGTTACATTTAGCACGTAAACAAAACAAGCACCTCCAATATTC
>86V
ACTTGGATGTCGACCGAAGCTGGGAAACCATCCTATACGAAAAATGACTCGCCGTCCATCTCCGAGGCACAC
>X0L
ACTTGGATGTCGACCGAAGCTGGGAAACCATCCTATCGAAAAATGACTCGCTGTCCATCTCCAAGGCACAC
>67T
CTTGGATGTCGACTGAAGCTGGGAAACCATCCTATCACAACATGACGTGCCGGCCATCTCCAAGGCACA

Obviously, there is one part sequence 'GGGAAACCATCCTATACGAAAAA' can be align from above sever reads. However, when I run it on cap3, it get nothing. Any one can recommend a better assembler? I expect to get the .ace file as out.