Hello.
I am still reading through the TopHat manual, and am looking for an option in Tophat that allows me to align the reads against a transcriptome reference, and for those it has a difficult time aligning, it tries to align them to the genome reference.
Advice?
I am still reading through the TopHat manual, and am looking for an option in Tophat that allows me to align the reads against a transcriptome reference, and for those it has a difficult time aligning, it tries to align them to the genome reference.
Advice?