Hey,
I have used MACS to find the peaks on 2 atac-seq samples (control and treatment). From there, I have binned the peaks in regions, and counted how many peaks each sample has in each region, and taken the regions with highest peak density difference between samples to further analise them.
What I would like to do know is check the histone marks for those regions to try to identify enhancers that may be involved in differential gene expression between both samples. Is there any tool available to do this kind of annotation?
I have used MACS to find the peaks on 2 atac-seq samples (control and treatment). From there, I have binned the peaks in regions, and counted how many peaks each sample has in each region, and taken the regions with highest peak density difference between samples to further analise them.
What I would like to do know is check the histone marks for those regions to try to identify enhancers that may be involved in differential gene expression between both samples. Is there any tool available to do this kind of annotation?
Comment