I'm learning to use Celera to assemble PacBio sequences. However, I can NOT make pacBioToCA working.
I'm stock with pacBioToCA command when I'm following the example exercise on http://sourceforge.net/apps/mediawik...tle=PacBioToCA
./fastqToCA -libraryname illumina -technology illumina -type sanger -innie -reads illumina.fastq > illumina.frg
java convertFastaAndQualToFastq wgs-7.0/Linux-amd64/bin/sampleData/pacbio.filtered_subreads.fasta > wgs-7.0/Linux-amd64/bin/sampleData/pacbio.filtered_subreads.fastq
./pacBioToCA -length 500 -partitions 200 -l pacbio -t 16 -s pacbio.spec -fastq pacbio.filtered_subreads.fastq illumina.frg
Then, here came an error message:
Running with 16 threads and 200 partitions
AMOS binaries: bank-transact not found in
I'm stock with pacBioToCA command when I'm following the example exercise on http://sourceforge.net/apps/mediawik...tle=PacBioToCA
./fastqToCA -libraryname illumina -technology illumina -type sanger -innie -reads illumina.fastq > illumina.frg
java convertFastaAndQualToFastq wgs-7.0/Linux-amd64/bin/sampleData/pacbio.filtered_subreads.fasta > wgs-7.0/Linux-amd64/bin/sampleData/pacbio.filtered_subreads.fastq
./pacBioToCA -length 500 -partitions 200 -l pacbio -t 16 -s pacbio.spec -fastq pacbio.filtered_subreads.fastq illumina.frg
Then, here came an error message:
Running with 16 threads and 200 partitions
AMOS binaries: bank-transact not found in
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