Hey,
I have 3 RNA-seq biological replicates of which I want to assess the reproducibility between the 3 replicates. I am only planning on performing HTSeq and looking at the read counts for our genes of interest. All the reproducibility analyses I have found are designed to analyze reproducibility based on differential expression between replicates. Are there any methods designed to look at the reproducibility based on the raw read counts between replicates?
Hopefully this question makes sense and any help anyone could provided would be great
I have 3 RNA-seq biological replicates of which I want to assess the reproducibility between the 3 replicates. I am only planning on performing HTSeq and looking at the read counts for our genes of interest. All the reproducibility analyses I have found are designed to analyze reproducibility based on differential expression between replicates. Are there any methods designed to look at the reproducibility based on the raw read counts between replicates?
Hopefully this question makes sense and any help anyone could provided would be great
Comment