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Old 04-29-2018, 06:56 AM   #1
s18692001
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Location: Taipei

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Question BBSplit result statistics

I use bbsplit.sh to run my analysis as following:
Code:
./bbmap/bbsplit.sh in1=R1_001_bc_prefix.fastq.gz  in2=R2_001_bc_prefix.fastq.gz  ref=hg19.fa,mm10.fa  basename=out_%.bam threads=4  ambig2=best
I want to know the mapping quality of the result. How can I access it?

Simon
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Old 04-29-2018, 03:54 PM   #2
GenoMax
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Cross-posted on Biostars: https://www.biostars.org/p/312084/
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