Dear all,
I am new for miRDeep2. Now I am trying to use the datasets from GEO. But how could I convert the geo txt file to fasta file. I tried to use the command as: geo2fasta.pl ./datas/GSE21279/GSM274171-9598.txt >read.fasta
but the read.fasta file is empty.
This is the geo txt file:
#ID_REF =
#VALUE = number of times small RNA was sequenced
ID_REF VALUE
TCGTATGCCGTCTTCTGCTTGAAAAAA 24660
TCCCTGGTGGTCTAGTGGTTAGGATTC 19051
GGTAAAATGGCTGAGTAAGCATTAGAC 15277
GGCTGGTCCGAAGGTAGTGAGTTATCT 14623
TCCCTGTGGTCTAGTGGTTAGGATTCG 12526
TGAGGTAGTAGGTTGTATGGTTTCGTA 10438
TGAGGTAGTAGATTGTATAGTTTCGTA 9830
I am new for miRDeep2. Now I am trying to use the datasets from GEO. But how could I convert the geo txt file to fasta file. I tried to use the command as: geo2fasta.pl ./datas/GSE21279/GSM274171-9598.txt >read.fasta
but the read.fasta file is empty.
This is the geo txt file:
#ID_REF =
#VALUE = number of times small RNA was sequenced
ID_REF VALUE
TCGTATGCCGTCTTCTGCTTGAAAAAA 24660
TCCCTGGTGGTCTAGTGGTTAGGATTC 19051
GGTAAAATGGCTGAGTAAGCATTAGAC 15277
GGCTGGTCCGAAGGTAGTGAGTTATCT 14623
TCCCTGTGGTCTAGTGGTTAGGATTCG 12526
TGAGGTAGTAGGTTGTATGGTTTCGTA 10438
TGAGGTAGTAGATTGTATAGTTTCGTA 9830
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