Hi!
I need to align 454 reads to a set of 17 reference sequences.
I thought to use bra with the men algorithm.
I built the index, then I tried:
bwa mem -t 5 -k 50 -r 1 -M poxE_bwa_db seqs.fna
It gave me this error:
[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M:rocess] read 2805 sequences (1947633 bp)...
Segmentation fault: 11
However, I have only 2800 sees to map, so I don't think it could be a memory problem.
Any suggestions?
I need to align 454 reads to a set of 17 reference sequences.
I thought to use bra with the men algorithm.
I built the index, then I tried:
bwa mem -t 5 -k 50 -r 1 -M poxE_bwa_db seqs.fna
It gave me this error:
[M::bwa_idx_load_from_disk] read 0 ALT contigs
[M:rocess] read 2805 sequences (1947633 bp)...
Segmentation fault: 11
However, I have only 2800 sees to map, so I don't think it could be a memory problem.
Any suggestions?
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