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Old 05-17-2016, 01:34 AM   #1
PandoraMid
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Location: Italy

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Default Problem with human_g1k_v37

Hi! I'm trying to use human_g1k_v37 reference genome and I've download it in .gz format but when I try to extract it I get an error.

Is there a way to extract or to download it in uncrompress format? Or is there a way to uncompress it?

Thank's
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Old 01-15-2021, 02:51 AM   #2
hermes2014
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Smile gzip: human_g1k_v37.fasta.gz: invalid compressed data--format violated

Hello, PandoraMid.

When I tried to unzip the human_g1k_v37.fasta.gz file the same as yours, I got the following error.

$ gzip -d human_g1k_v37.fasta.gz
gzip: human_g1k_v37.fasta.gz: invalid compressed data--format violated

In this case, I used the file.
ftp://ftp-trace.ncbi.nih.gov/1000gen...k_v37.fasta.gz

But I downloaded another file and tried it, and it was extracted without any problems.
ftp://ftp.1000genomes.ebi.ac.uk/vol1...k_v37.fasta.gz

I don't know exactly why,
Please try the file from ftp.1000genomes.ebi.ac.uk. This file is well extracted.

Last edited by hermes2014; 01-16-2021 at 10:33 PM.
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