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miRNA identification in plants using smallRNA deep SEQ data PRJ Bioinformatics 4 09-13-2013 05:11 AM
PubMed: Identification of novel and known miRNAs in deep-sequencing data with miRDeep Newsbot! Literature Watch 2 07-12-2013 07:06 AM

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Old 07-12-2013, 06:53 AM   #1
mariana.ft
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Location: U.K.

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Smile mirDeep-2 novel miRNA identification

Dear all

I would like to use mirDeep_2 for to identify novel miRNAs but I'm not sure which tool should I use, could you please let me know which one have you use?

Thanks a lot!
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Old 07-12-2013, 07:17 AM   #2
babi2305
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Quote:
Originally Posted by mariana.ft View Post
Dear all

I would like to use mirDeep_2 for to identify novel miRNAs but I'm not sure which tool should I use, could you please let me know which one have you use?

Thanks a lot!
Hi,

I am using mirDeep2 for miRNA prediction and its super fast, generating very nice output files. Are you looking for other miRNA prediction tools? I would suggest first you must start with mirDeep2.
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Old 08-31-2013, 09:02 PM   #3
ninad
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Post miRNA Expression Analysis tool?

HI miRDeep to only dtects the novel miRNAs or does it also give normalized expression data for all known RNAs? Which is the best tool to analyze miRNAseq data?
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