Hi all
If there are two reads convering a position, and one read happens to have a delete in this position. I want to know the coverage (or the read depth) in position 5, 1 or 2? What is the difference between the coverage and the read depth? If the quality is below the base quality threshold, what is the coverage then?
123456789
AGGGTCTCC
AGGG.CTCC
Thanks.
If there are two reads convering a position, and one read happens to have a delete in this position. I want to know the coverage (or the read depth) in position 5, 1 or 2? What is the difference between the coverage and the read depth? If the quality is below the base quality threshold, what is the coverage then?
123456789
AGGGTCTCC
AGGG.CTCC
Thanks.
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