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Old 02-08-2015, 02:40 PM   #1
arnoldbaino
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Location: Australia

Join Date: Feb 2015
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Default GATK2 in galaxy

Hello,

I need to do variant calling in galaxy using GATK (Unified genotyper) but it keeps giving me error. I first treated the data in Picard (add or remove groups, paired end read fixer and removed duplicate) but it keeps failing inGATK. Can any please help me with a proper work flow for use of GATK in galaxy. Thank you
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