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Old 01-18-2012, 06:04 AM   #1
Junior Member
Location: Taiwan

Join Date: Dec 2011
Posts: 5
Default EBARDenovo - A new RNA-seq do novo assembler for paired-end Illumina data


I wrote a program for de novo assembly of paired-end RNA-seq data.

It's a 64-bits Windows command with .Net framework

You can try it on a Windows-7 PC with 16G RAM for the assembly of single run Illumina transcriptomic data (20G, 90bp~100bp paired-end reads).

EBARDenovo is designed for finding lower-expressed transcripts even their coverage depths are very low (even less than 2x).

The download link:

I wish you can obtained fine results by my EBARDenovo program.

Best regards,

I am Hsueh-Ting Chu from Taiwan.
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Old 05-22-2013, 11:22 PM   #2
Location: seoul, korea

Join Date: Jun 2010
Posts: 12

Dear Hsueh-Ting Chu from Taiwan

Good to know about your EBARDenovo. Does it support for transcriptome data generated from other platforms like ion torrent other than Illumina.

haojam is offline   Reply With Quote
Old 06-10-2013, 12:13 AM   #3
Junior Member
Location: Bangalore

Join Date: May 2013
Posts: 1

Hi Hsueh-Ting Chu,

Could you please give me some Idea on working with denovo bacterial transcriptome data to find the expression level.

manoharan1988 is offline   Reply With Quote

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