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Thread | Thread Starter | Forum | Replies | Last Post |
Ideas how to annotate vcf with local variant freq info? | swNGS | Bioinformatics | 5 | 05-20-2013 09:33 AM |
min-coverage-normal & min-coverage-tumor in VarScan somatic | Jane M | Bioinformatics | 2 | 11-20-2012 09:46 AM |
Var-md : How do use it ? | jpofmars | Bioinformatics | 6 | 08-21-2012 04:52 AM |
DESeq estimates of mu,var | bruce01 | Bioinformatics | 0 | 01-10-2012 06:53 AM |
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#1 |
Junior Member
Location: Vietnam Join Date: Apr 2015
Posts: 3
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Hi guys!
Does anyone understand the option "--min-var-freq" of Varscan2mpileup? I know this means mimimum variant allele frequency to call SNPs but I feel it is not clear. Anyone help me? thanks. |
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