Go Back   SEQanswers > Applications Forums > Genomic Resequencing

Similar Threads
Thread Thread Starter Forum Replies Last Post
Ideas how to annotate vcf with local variant freq info? swNGS Bioinformatics 5 05-20-2013 09:33 AM
min-coverage-normal & min-coverage-tumor in VarScan somatic Jane M Bioinformatics 2 11-20-2012 09:46 AM
Var-md : How do use it ? jpofmars Bioinformatics 6 08-21-2012 04:52 AM
DESeq estimates of mu,var bruce01 Bioinformatics 0 01-10-2012 06:53 AM

Thread Tools
Old 04-26-2015, 07:48 AM   #1
Junior Member
Location: Vietnam

Join Date: Apr 2015
Posts: 3
Default --min-var-freq Varscan2mplieup

Hi guys!

Does anyone understand the option "--min-var-freq" of Varscan2mpileup? I know this means mimimum variant allele frequency to call SNPs but I feel it is not clear. Anyone help me? thanks.
Joanna_trinh is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:39 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO