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Old 09-29-2014, 06:25 PM   #1
Jean_Guillaume777
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Location: Québec, Canada

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Arrow Comparative genomics

Hi everyone,
I begin a new study in comparative genomics between two strains from same species (a reference strain and a new one freshly assembled and annotated). I need to find all the differences between the two chromosomal sequences, except SNPs. Up to now, I have used ACT to visualize the genomic alignment and I have listed all the differences manually. I can say for now that the majority of differences are caused by movement of insertion sequences (ISs).

Now that I know the nature of the all differences between the two genomes, I want to use a web server to do the sames analyses that me, just to check the accuracy of my results
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Old 10-04-2014, 07:31 AM   #2
Antony03
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Just a little up. I have the same question.
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Old 04-16-2015, 01:57 PM   #3
milo0615
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Location: Walnut, California

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Quote:
Originally Posted by Jean_Guillaume777 View Post
Hi everyone,
I begin a new study in comparative genomics between two strains from same species (a reference strain and a new one freshly assembled and annotated). I need to find all the differences between the two chromosomal sequences, except SNPs. Up to now, I have used ACT to visualize the genomic alignment and I have listed all the differences manually. I can say for now that the majority of differences are caused by movement of insertion sequences (ISs).

Now that I know the nature of the all differences between the two genomes, I want to use a web server to do the sames analyses that me, just to check the accuracy of my results
Hi Jean,

were you able to figure it out? Please share.
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Old 04-19-2015, 09:21 AM   #4
AntonioRFranco
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Take a look to this page VISTA Tool. I sucessfully have recently compared two full steptococcus genomes. I eventually process the information that this service gave me to figure out the genes present in one strain that were missing in the other
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Old 06-19-2015, 06:15 AM   #5
Jean_Guillaume777
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Thank you AntonioRFranco!

I will try VISTA Tool for my genomic comparison.
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