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Old 12-05-2011, 06:49 AM   #1
Junior Member
Location: Rosario, Argentina

Join Date: Feb 2011
Posts: 4
Default How to get assembly metrics from (AMOS) minimus and minimo assemblies?

Hi everybody!

Recently, I tried the assemblers minimus and minimo from the AMOS v3.1.0 package to assemble a bacteria de novo using 454 Titanium reads.

However, although the assemblies finished ok (no errors reported) I couldn't find out an assembly metrics file like when using Newbler (454NewblerMetrics.txt) or Mira (bacteria_info_assembly.txt).

Does anybody knows how to obtain this data from these assemblers (minimus and minimo)?

Thank you very much in advance.


Estefania is offline   Reply With Quote
Old 12-17-2011, 06:11 AM   #2
Location: Oslo, Norway

Join Date: Oct 2011
Posts: 17

Not all assemblers output as detailed information as Newbler does, but I've been using the script (, to get the basic info about N50, mean, longest, etc., from my assemblies.
Ole is offline   Reply With Quote

454, amos, de novo assembly, minimo, minimus

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