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Old 05-26-2020, 09:12 AM   #1
fjkvfhjkgjkkhfdsd
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Default Database containing links between PubMed-Publications and Gene Names

Does a database exist which contains links between PubMed-Publications and Gene Names? Use Case: I want to find all relevant PubMed-Publications (PubMed-Ids) for a specific Gene Name. Many thanks and best regards.
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Old 05-26-2020, 09:35 AM   #2
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Example: Get all publications for Cdc45 (ENSMUSG00000000028)
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Old 05-26-2020, 09:46 AM   #3
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You can check Entrezdirect from NCBI. Use it to do pubmed database searches like this.

Code:
 esearch -db pubmed -query "CDC45 [GENE]" | efetch -format abstract
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Old 05-26-2020, 10:43 AM   #4
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Is it also possible to do the query as HTTP request?
Many Thanks.
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Old 05-26-2020, 12:07 PM   #5
GenoMax
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Yes it should be possible. Take a look at this page.
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