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  • Why the pacbio isoseq data used for RNA analysis is much more than illumina data?

    As we all know, for the human RNA-seq analysis, 4-6G clean data from illumina platform is enough. But when I use pacbio's ISO-seq pipline, the subread data is more than 10 times the amount of illumina data. So what causes the difference between the amout of data from this two platform?

    Thanks a lot for any reply!
    happy

  • #2
    pacBio has less # of reads than illumina does, but each read is much longer.
    And barcoding is more common on illumina platforms. Based on your number (4-6G), you are probably talking about barcoded library.

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