Hello,
It is my first time to use the DEXSeq package. I have performed all the steps according to the vignette and so far everything was working fine. However, I get the following error and warning messages after estimatelog2FoldChanges command:
Error in `row.names<-.data.frame`(`*tmp*`, value = c("geneID", "exonID", :
duplicate 'row.names' are not allowed
In addition: Warning messages:
1: In is.na(x) : is.na() applied to non-(list or vector) of type 'NULL'
2: non-unique value when setting 'row.names': ‘log2fold(/)’
Needless to say, no log2fold values are calculated. The head of the DEUresultTable has exactly the same structure as presented in the vignette, therefore I have trouble understanding, which row names are out of the required format or why this error only appears at this step.
I would really appreciate the help!
It is my first time to use the DEXSeq package. I have performed all the steps according to the vignette and so far everything was working fine. However, I get the following error and warning messages after estimatelog2FoldChanges command:
Error in `row.names<-.data.frame`(`*tmp*`, value = c("geneID", "exonID", :
duplicate 'row.names' are not allowed
In addition: Warning messages:
1: In is.na(x) : is.na() applied to non-(list or vector) of type 'NULL'
2: non-unique value when setting 'row.names': ‘log2fold(/)’
Needless to say, no log2fold values are calculated. The head of the DEUresultTable has exactly the same structure as presented in the vignette, therefore I have trouble understanding, which row names are out of the required format or why this error only appears at this step.
I would really appreciate the help!
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