Dear all,
After running SOAP assembly, I am trying to scaffold them using bambus2.
However, when I convert the contig file into afg file, there is an
error like this:
[jjin@fnode1 bambus2]$ /diag/software/metAMOS-1.0b/AMOS/Linux-x86_64/bin/./samtoafg ../oil_palm.contig ../DNA_oil_palm_bowtie.sam > assembly.afg
Died at diag/software/metAMOS-1.0b/AMOS/Linux-x86_64/bin/./samtoafg line 105, <>
line 92495419.
Can anyone give me some suggestions?
Thanks!
Jingjing
After running SOAP assembly, I am trying to scaffold them using bambus2.
However, when I convert the contig file into afg file, there is an
error like this:
[jjin@fnode1 bambus2]$ /diag/software/metAMOS-1.0b/AMOS/Linux-x86_64/bin/./samtoafg ../oil_palm.contig ../DNA_oil_palm_bowtie.sam > assembly.afg
Died at diag/software/metAMOS-1.0b/AMOS/Linux-x86_64/bin/./samtoafg line 105, <>
line 92495419.
Can anyone give me some suggestions?
Thanks!
Jingjing