Hi There,
I am quite new to Linux and Bioperl. I have used blast to find alignments. I need to store the complete query sequence of all hit reads to a seperate file (not just hit sequence). I tried regular expressions..may be i am not using the right match string..I also tried fastacmd command..
So far no luck in extracting few reads from fasta file.
Please help me!
Thanks in advance..
-Prashanth
I am quite new to Linux and Bioperl. I have used blast to find alignments. I need to store the complete query sequence of all hit reads to a seperate file (not just hit sequence). I tried regular expressions..may be i am not using the right match string..I also tried fastacmd command..
So far no luck in extracting few reads from fasta file.
Please help me!
Thanks in advance..
-Prashanth
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