I have successfully used blat executable on my system, but the problem is i am able to take only one reference sequence as reference database against query sequences.
Now i want to take multiple sequence as reference database in one command line and find query alignment.
Commonly, I will do like this:
faToNib in.fa out.nib
blat out.nib query.fasta output.psl
However, the in.fa file can only have one sequence
How can i do that for many reference sequence?
Thanks!
Jingjing
Now i want to take multiple sequence as reference database in one command line and find query alignment.
Commonly, I will do like this:
faToNib in.fa out.nib
blat out.nib query.fasta output.psl
However, the in.fa file can only have one sequence
How can i do that for many reference sequence?
Thanks!
Jingjing
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