Hi,
I am quiet new to CNV analysis and i have a general query.
I have SNP array data from Affymetrix and Illumina, would you please comment (or provide a reference) on the pros and cons of using two different platforms, like the possible issues to make a comparision between the CNV results? possible batch effects etc..
What steps should be considered when using data from two different platforms. Any references would be helpful.
I am quiet new to CNV analysis and i have a general query.
I have SNP array data from Affymetrix and Illumina, would you please comment (or provide a reference) on the pros and cons of using two different platforms, like the possible issues to make a comparision between the CNV results? possible batch effects etc..
What steps should be considered when using data from two different platforms. Any references would be helpful.
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