Hi fellows,
I'm assembling a Denovo genome with SGA, using reads generated by Illumina HiScan.
Everything seems to be ok, although it's been running for 10 days now (in a 40 dual-core processors / 1TB RAM single machine). Is that normal?
Also, as this is my first assemble with SGA, I'm in doubt with the files already generated... it produced files like:
merged.k41.rmdup-thread0.hits.gz
...
...
...
merged.k41.rmdup-thread77.hits.gz
merged.k41.rmdup-thread78.hits.gz
and so on...
I guess it's being produced by each of the 80 threads I've said SGA to work with.
Are all those files expected or should it be only a single merged file?
I tried looking at the references but couldn't find any plausible answer.
Thank you in advance!
George Condomitti.
I'm assembling a Denovo genome with SGA, using reads generated by Illumina HiScan.
Everything seems to be ok, although it's been running for 10 days now (in a 40 dual-core processors / 1TB RAM single machine). Is that normal?
Also, as this is my first assemble with SGA, I'm in doubt with the files already generated... it produced files like:
merged.k41.rmdup-thread0.hits.gz
...
...
...
merged.k41.rmdup-thread77.hits.gz
merged.k41.rmdup-thread78.hits.gz
and so on...
I guess it's being produced by each of the 80 threads I've said SGA to work with.
Are all those files expected or should it be only a single merged file?
I tried looking at the references but couldn't find any plausible answer.
Thank you in advance!
George Condomitti.
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