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Old 01-14-2015, 04:13 AM   #1
thiNGS
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Location: Netherlands

Join Date: Sep 2014
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Default coverage over genes using GenomeAnalysis TK

Hi. Is there a way to calculate coverage over genes getting an output where you actually can read your gene ID? I am using DepthOfCoverage with GATK but I always end up with coverage over every single chrom position of my interval list but no gene name. Do you know a way to see also the gene name in you output?
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