SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Converting FASTA/qual file pair from 454 to FASTQ oiiio Bioinformatics 9 01-01-2016 04:55 PM
how to convert general fastq to fastq int format? feng Bioinformatics 21 07-04-2014 12:40 AM
For MAQ: Is there a Tool to convert sanger-format fastq file to illumina-fotmat fastq byb121 Bioinformatics 6 12-20-2013 02:26 AM
Convert fastq from NCBI SRA to fasta and qual? kmkocot Bioinformatics 7 10-09-2012 10:15 AM
Split fastq to fasta and qual file? ewilbanks Bioinformatics 8 01-07-2011 03:02 AM

Reply
 
Thread Tools
Old 04-10-2009, 06:58 AM   #1
anyone1985
Member
 
Location: shanghai, chia

Join Date: Mar 2009
Posts: 67
Default format problem:convert fastq to seq/qual file

hi, I want to use AllPaths to assemble my solexa data. But it need seq/qual format file. What i have is the fastq format. How can i convert it to seq/qual format?
anyone1985 is offline   Reply With Quote
Old 04-10-2009, 09:27 AM   #2
cariaso
Member
 
Location: Wageningen, the Netherlands

Join Date: Jan 2008
Posts: 31
Default

biopython can now read fastq
http://news.open-bio.org/news/2009/0...en-sequencing/

I assume bioperl can also
cariaso is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 01:31 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2018, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO