pair reads visualization

[Pol8]

Hi all,

is there a way in IGV (or other viewer) to visualize the pair reads, displaying each pair couple in a single line? I want to see how the two reads of each pair are far/close to each other. By default, after I load the bam file, each read of a pair is aligned to the reference, but the two reads of the same pair are not on the same line. So, with thousands of reads, I can't understand how the reads of the same pair couple are mapped relatively to each other..

[blancha]

"Select View as pairs from the right-click menu to display pairs together with a line joining the ends as shown in the image below."

http://www.broadinstitute.org/igv/AlignmentData#paired