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Old 09-20-2011, 06:23 AM   #1
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Default Canonical direction and assembly


I'm looking at Contrail and trying to understand what "Canonical Sequence Direction" means. In Contrail the canonical sequence direction depends on whether the sequence or its reverse complement comes first lexicographically. I assume canonical direction is somehow used to consider the fact that the read might have come from either strand. Can anyone shed more light on this?

jlewi is offline   Reply With Quote

canonical, contrail, denovo

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