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Old 05-19-2020, 09:55 PM   #1
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Location: Sapporo

Join Date: May 2020
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Default Annovar Annotation for CanFam3

Dear community members,

I am currently trying my luck with the tool called ANNOVAR in my attempt to filter out my huge data of SNP called from the whole genome sequencing of 3 dogs after SNP calling and filtering using a commercial product named Strand-NGS.

I realized there are multiple studies out there using ANNOVAR to annotate and filter VCF files, but there is no single paper stating where did they begin to download the annotation files to ANNOVAR, nor the links in the ANNOVAR FAQ, publication or tutorials show how we are supposed to download the annotation for species other than humans to the ANNOVAR terminal for further analysis.

Anyone with experience of using ANNOVAR to annotate canine whole genome sequencing out there who can share some tips?

Thank you.
rtyb91 is offline   Reply With Quote

annovar, dog, wgs

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