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Old 12-09-2009, 05:51 AM   #1
hsmart
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Location: Maryland

Join Date: Dec 2009
Posts: 15
Default MosaikAligner

Hi All,

I am trying to use MosaikAligner with following command.
MosaikAligner -in s_1_sequence.dat -ia hg19_ref.dat -m unique -mm 2 -hs 11 -act 20 -out s_1_sequence_aligned.dat -rur s_1_sequence_unaligned.dat
However, I am getting following error message.
Found a mismatch between the uncompressed concatenated 2-bit sequence length and the header concatenated 2-bit sequence length
Can you please help me?

Thanks,

Hemant
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