Dear All,
I hope someone here can help me figure out how to make BreakDancer's bam2cfg.pl work. I just downloaded the latest version of BreakDancer from http://breakdancer.sourceforge.net/index.html
From this page http://breakdancer.sourceforge.net/moreperl.html, it looks like we need download two perl modules. So, I downloaded them and put them into a library directory and added
at the beginning of bam2cfg.pl.
But after I ran bam2cfg.pl, I still got this error
Can anyone share your experience of doing this?
All your help will be greatly appreciated.
-c
I hope someone here can help me figure out how to make BreakDancer's bam2cfg.pl work. I just downloaded the latest version of BreakDancer from http://breakdancer.sourceforge.net/index.html
From this page http://breakdancer.sourceforge.net/moreperl.html, it looks like we need download two perl modules. So, I downloaded them and put them into a library directory and added
Code:
use lib 'myDirectory/lib/';
But after I ran bam2cfg.pl, I still got this error
Code:
Use of uninitialized value in printf at /myDirectory/bam2cfg.pl line 223.
All your help will be greatly appreciated.
-c
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