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Old 07-08-2011, 05:29 PM   #1
rna_seeker
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Default using vcf tools to extract genotype information

Hello,

I am wondering if there is a way to extract genotype information using vcftools or another tool from a .vcf file

to produce a string of genotypes of the form "AAAAAGAGAA" for each snp

Thanks
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Old 07-09-2011, 01:54 AM   #2
ymc
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I also want to know how to convert vcf to the beagle format
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Old 07-10-2011, 07:19 AM   #3
rna_seeker
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Default convert vcf to beagle

A nice python script does the job

http://www.wikipl.com/index.php/Convert_VCF_to_beagle
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Old 07-10-2011, 06:25 PM   #4
ymc
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Quote:
Originally Posted by rna_seeker View Post
Thanks. I will give it a try.
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