Go Back   SEQanswers > Sequencing Technologies/Companies > SOLiD

Similar Threads
Thread Thread Starter Forum Replies Last Post
Color-space/SOLID assembly issues? JueFish Bioinformatics 19 12-14-2011 06:21 AM
Stupid perl scripts for converting colour-space <-> base-space gringer Bioinformatics 7 07-20-2011 08:35 AM
Converting nucleotide-space to color-space javijevi Bioinformatics 7 11-29-2010 03:14 AM
Bowtie, Color-space reads, and confusing base qualities at variable sites keebs42 Bioinformatics 6 03-13-2010 05:51 PM
direct mapping of color-space data against color-space begsch SOLiD 1 09-09-2009 10:25 PM

Thread Tools
Old 10-26-2010, 01:10 AM   #1
Junior Member
Location: whole transcriptome

Join Date: Oct 2010
Posts: 8
Default Solid formats translator(base space/color space/double encoded)


When I performed Solid software denovo2, I used to convert color space into double encoded and completed Oases. but the result was transcripts.fa and could not use to convert double encoded into base space. I looked at "java -cp $denovo2/utils/miniAssembler.jarcom.lifetech.miniAssembler.util.FormatsTranslator <conversion_type> <sequence_file> <out_converted_file>" in DeNovoAssemblyProtocol0060810.pdf at page 32. however, in my denovo2 folder, there is not miniAssembler.jarcom.lifetech.miniAssembler.util.FormatsTranslator but miniAssembler. I could not convert it by miniAssembler.

I look forward to everyone letter.
Thank you
AronaldJ is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 04:03 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO