Hi,
Soap denovo gives out scaffold sequences with "N's" in place of gaps.
Is anybody aware of a script or tool to convert it to .afg format?
toAMOS just converts fasta files or mate files. I am looking for something that coverts the scaffolds into .afg without having to generate the mate files.
Thanks
Soap denovo gives out scaffold sequences with "N's" in place of gaps.
Is anybody aware of a script or tool to convert it to .afg format?
toAMOS just converts fasta files or mate files. I am looking for something that coverts the scaffolds into .afg without having to generate the mate files.
Thanks