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Old 12-24-2019, 03:41 PM   #1
mohsamir
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Default Regarding Deseq2 in R

Can anyone help in this?
When I run Deseq2 in R, it produces this "dds" subject and also the "res" subjects
I assume that the normalized count is in the DDS dubject : is this is correct ? Can one supply a simple function to get only an excel table for the normalized read count ?
Also a script for a simple heatmap to show the Log2FC of all genes across my conditions ?

Thanks
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Old 12-31-2019, 03:11 PM   #2
maria1230982
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I found this forum by typing almost exactly this question. Hopefully someone can answer it!
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Old 12-31-2019, 03:45 PM   #3
GenoMax
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You can access the normalized counts: https://support.bioconductor.org/p/66067/ Take a look at DESeq2 vignette for answers on how to plot results.
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