SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Newbie in scRNA-Seq looking for advice soph Introductions 0 12-14-2019 07:18 AM
Interested in scRNA-seq data analysis? Physalia-courses Events / Conferences 0 11-01-2018 05:04 AM
Advice for scRNA-seq Data sallehl RNA Sequencing 0 04-09-2018 04:54 PM
Need advice on analysing RNA-seq time series JonB Bioinformatics 6 07-11-2014 12:07 PM
Analysing RNA seq data Balat RNA Sequencing 8 05-27-2010 05:47 PM

Reply
 
Thread Tools
Old 01-14-2020, 03:59 AM   #1
Banjulhu
Junior Member
 
Location: Washington

Join Date: Jul 2013
Posts: 1
Default Looking for advice on analysing scRNA-seq data from patients with Seurat

Hi All

One of our local lab groups has taken the jump to start doing scRNA-seq and has asked for assistence in analysing their data.

Becuase it is 10x data we settled on using cellranger followed by Seurat as the initial starting point to do some clustering and expression testing.

I'm more than happy with how to get data into Seurat and do clustering in general but am looking for advice on what would be the best way to input and process data from 4 patients and 4 controls with the aim of being able to test between the two groups.
Banjulhu is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 09:35 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO